Mouse gene expression | Human genetic association | ||||||||
---|---|---|---|---|---|---|---|---|---|
Wild-type v. Rasgrf2−/− | Rasgrf2 expression | Binge drinking | |||||||
Mouse gene | MM | FC | p value | r | p value | Human gene | n | SNP* | p value |
Ehd4 | 0.94 | 0.67 | < 0.001 | 0.71 | < 0.001 | EHD4 | 30 | rs1648821 | < 0.001 |
Klc1 | 0.77 | 0.78 | < 0.001 | 0.64 | 0.004 | KLC1 | 10 | rs861550 | 0.009 |
Slc5a5 | 0.74 | 1.23 | < 0.001 | 0.66 | 0.003 | SLC5A5 | 6 | rs7508025 | 0.011 |
Capn3 | 0.66 | 0.17 | 0.006 | 0.67 | 0.002 | CAPN3 | 9 | rs4924675 | 0.017 |
Dcp1b | 0.83 | 0.58 | < 0.001 | 0.61 | 0.008 | DCP1B | 16 | rs972657 | 0.022 |
Snapc3 | 0.82 | 0.38 | < 0.001 | 0.62 | 0.006 | SNAPC3 | 10 | rs6474915 | 0.023 |
Emp2 | 0.79 | 0.44 | < 0.001 | 0.59 | 0.009 | EMP2 | 30 | rs6498070 | 0.024 |
Lypd6b | 0.79 | 0.39 | < 0.001 | 0.60 | 0.008 | LYPD6B | 49 | rs10490383 | 0.026 |
Ccl17 | 0.63 | 0.35 | 0.004 | 0.60 | 0.008 | CCL17 | 8 | rs4784805 | 0.026 |
Snapc1 | 0.81 | 0.42 | < 0.001 | 0.63 | 0.005 | SNAPC1 | 8 | rs7143626 | 0.036 |
Adamts9 | 0.98 | 0.85 | < 0.001 | 0.61 | 0.007 | ADAMTS9 | 67 | rs6793277 | 0.037 |
Gpr176 | 0.73 | 0.32 | < 0.001 | 0.63 | 0.005 | GPR176 | 26 | rs17646847 | 0.045 |
Map4k5 | 0.83 | 0.23 | < 0.001 | 0.64 | 0.004 | MAP4K5 | 20 | rs12881869 | 0.049 |
Neo1 | 0.93 | 0.61 | < 0.001 | 0.63 | 0.005 | NEO1 | 30 | rs4132535 | 0.06 |
Pgpep1 | 0.85 | 0.45 | < 0.001 | 0.61 | 0.008 | PGPEP1 | 11 | rs1978423 | 0.09 |
Pbx4 | 0.67 | 0.24 | 0.003 | 0.65 | 0.003 | PBX4 | 7 | rs12610185 | 0.11 |
Rnd3 | 0.92 | 0.89 | < 0.001 | 0.63 | 0.005 | RND3 | 12 | rs1528429 | 0.12 |
Zfp609 | 0.73 | 0.14 | 0.005 | 0.61 | 0.008 | ZNF609 | 10 | rs547818 | 0.12 |
Polr3k | 0.81 | 0.28 | < 0.001 | 0.76 | < 0.001 | POLR3K | 5 | rs216600 | 0.13 |
A330021E22Rik | 0.97 | 1.28 | < 0.001 | 0.60 | 0.008 | C7orf63 | 15 | rs11563435 | 0.17 |
Tmco5 | 0.75 | 0.18 | 0.002 | 0.69 | 0.002 | TMCO5A | 5 | rs1604528 | 0.19 |
2410076I21Rik | 0.79 | 0.26 | < 0.001 | 0.62 | 0.006 | C15orf60 | 13 | rs7176074 | 0.24 |
Lrrc57 | 0.99 | 2.44 | < 0.001 | 0.61 | 0.007 | LRRC57 | 1 | rs10851410 | 0.50 |
Tubgcp4 | 0.95 | 0.62 | < 0.001 | 0.70 | 0.001 | TUBGCP4 | 3 | rs2412780 | 0.53 |
Itgb3bp | 0.88 | 0.61 | < 0.001 | 0.74 | < 0.001 | ITGB3BP | 9 | rs3790867 | 0.54 |
Dguok | 0.83 | 0.38 | < 0.001 | 0.62 | 0.006 | DGUOK | 9 | rs13411881 | 0.56 |
Xkr8 | 0.72 | 0.35 | < 0.001 | 0.63 | 0.005 | XKR8 | 6 | rs4908382 | 0.74 |
Arl5a | 0.97 | 1.70 | < 0.001 | 0.64 | 0.004 | ARL5A | 2 | rs10182533 | 0.78 |
FC = fold change on log2 scale between wild-type and Rasgrf2−/− mice; MM = module membership; SNP = single-nucleotide polymorphism.
↵* SNP with the lowest p value (best SNP) for the gene.