Somatic mutations affect key pathways in lung adenocarcinoma

L Ding, G Getz, DA Wheeler, ER Mardis, MD McLellan… - Nature, 2008 - nature.com
Determining the genetic basis of cancer requires comprehensive analyses of large collections
of histopathologically well-classified primary tumours. Here we report the results of a …

Genome remodelling in a basal-like breast cancer metastasis and xenograft

LI Ding, MJ Ellis, S Li, DE Larson, K Chen, JW Wallis… - Nature, 2010 - nature.com
Massively parallel DNA sequencing technologies provide an unprecedented ability to
screen entire genomes for genetic changes associated with tumour progression. Here we …

[PDF][PDF] Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

…, V Wang, Y Qi, MD Wilkerson, CR Miller, L Ding… - Cancer cell, 2010 - cell.com
The Cancer Genome Atlas Network recently cataloged recurrent genomic abnormalities in
glioblastoma multiforme (GBM). We describe a robust gene expression-based molecular …

[HTML][HTML] Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing

L Ding, TJ Ley, DE Larson, CA Miller, DC Koboldt… - Nature, 2012 - nature.com
Most patients with acute myeloid leukaemia (AML) die from progressive disease after relapse,
which is associated with clonal evolution at the cytogenetic level 1 , 2 . To determine the …

[HTML][HTML] DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

TJ Ley, ER Mardis, L Ding, B Fulton, MD McLellan… - Nature, 2008 - nature.com
Acute myeloid leukaemia is a highly malignant haematopoietic tumour that affects about
13,000 adults in the United States each year. The treatment of this disease has changed little in …

[HTML][HTML] The genetic basis of early T-cell precursor acute lymphoblastic leukaemia

J Zhang, L Ding, L Holmfeldt, G Wu, SL Heatley… - Nature, 2012 - nature.com
Early T-cell precursor acute lymphoblastic leukaemia (ETP ALL) is an aggressive malignancy
of unknown genetic basis. We performed whole-genome sequencing of 12 ETP ALL cases …

[PDF][PDF] Oncogenic signaling pathways in the cancer genome atlas

…, MH Bailey, WW Liang, SM Foltz, I Shmulevich, L Ding… - Cell, 2018 - cell.com
Genetic alterations in signaling pathways that control cell-cycle progression, apoptosis, and
cell growth are common hallmarks of cancer, but the extent, mechanisms, and co-…

VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

…, L Lin, CA Miller, ER Mardis, L Ding… - Genome …, 2012 - genome.cshlp.org
Cancer is a disease driven by genetic variation and mutation. Exome sequencing can be
utilized for discovering these variants and mutations across hundreds of tumors. Here we …

[HTML][HTML] Mutational landscape and significance across 12 major cancer types

…, MC Wendl, TJ Ley, RK Wilson, BJ Raphael, L Ding - Nature, 2013 - nature.com
The Cancer Genome Atlas (TCGA) has used the latest sequencing and analysis methods to
identify somatic variants across thousands of tumours. Here we present data and analytical …

[HTML][HTML] Targetable kinase-activating lesions in Ph-like acute lymphoblastic leukemia

…, YL Yang, D Pei, K McCastlain, L Ding… - New England journal …, 2014 - Mass Medical Soc
Background Philadelphia chromosome–like acute lymphoblastic leukemia (Ph-like ALL) is
characterized by a gene-expression profile similar to that of BCR–ABL1–positive ALL, …