User profiles for Simone Sidoli

Simone Sidoli

Albert Einstein College of Medicine
Verified email at einsteinmed.edu
Cited by 7424

An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease

R Nativio, Y Lan, G Donahue, S Sidoli, A Berson… - Nature …, 2020 - nature.com
Protein aggregation is the hallmark of neurodegeneration, but the molecular mechanisms
underlying late-onset Alzheimer’s disease (AD) are unclear. Here we integrated transcriptomic…

H1 histones control the epigenetic landscape by local chromatin compaction

…, Y David, E Cesarman, AM Melnick, S Sidoli… - Nature, 2021 - nature.com
H1 linker histones are the most abundant chromatin-binding proteins 1 . In vitro studies
indicate that their association with chromatin determines nucleosome spacing and enables …

Two distinct modes for propagation of histone PTMs across the cell cycle

…, TK Barth, N Reverón-Gómez, S Sidoli… - Genes & …, 2015 - genesdev.cshlp.org
Epigenetic states defined by chromatin can be maintained through mitotic cell division.
However, it remains unknown how histone-based information is transmitted. Here we combine …

[PDF][PDF] High-resolution mapping of RNA-binding regions in the nuclear proteome of embryonic stem cells

C He, S Sidoli, R Warneford-Thomson, DC Tatomer… - Molecular cell, 2016 - cell.com
Interactions between noncoding RNAs and chromatin proteins play important roles in gene
regulation, but the molecular details of most of these interactions are unknown. Using protein-…

[HTML][HTML] Transcription factor cooperativity in early adipogenic hotspots and super-enhancers

R Siersbćk, A Rabiee, R Nielsen, S Sidoli, S Traynor… - Cell reports, 2014 - cell.com
It is becoming increasingly clear that transcription factors operate in complex networks
through thousands of genomic binding sites, many of which bind several transcription factors. …

Macrophages use apoptotic cell-derived methionine and DNMT3A during efferocytosis to promote tissue resolution

…, G Kuriakose, LNF Darville, Y Sun, S Sidoli… - Nature …, 2022 - nature.com
Efferocytosis, the clearance of apoptotic cells (ACs) by macrophages, is critical for tissue
resolution, with defects driving many diseases. Mechanisms of efferocytosis-mediated …

Acetyl-CoA metabolism supports multistep pancreatic tumorigenesis

…, SL Campbell, RJ Norgard, KC Schultz, S Sidoli… - Cancer discovery, 2019 - AACR
Pancreatic cancer is among the deadliest of human malignancies. We identify a key role for
the metabolic enzyme ACLY, which produces acetyl-CoA, in pancreatic carcinogenesis. The …

Complete workflow for analysis of histone post-translational modifications using bottom-up mass spectrometry: from histone extraction to data analysis

S Sidoli, NV Bhanu, KR Karch, X Wang… - JoVE (Journal of …, 2016 - jove.com
Nucleosomes are the smallest structural unit of chromatin, composed of 147 base pairs of
DNA wrapped around an octamer of histone proteins. Histone function is mediated by …

[HTML][HTML] Characterization of histone acylations links chromatin modifications with metabolism

J Simithy, S Sidoli, ZF Yuan, M Coradin… - Nature …, 2017 - nature.com
Over the last decade, numerous histone acyl post-translational modifications (acyl-PTMs)
have been discovered, of which the functional significance is still under intense study. Here, …

[PDF][PDF] Genomic and proteomic resolution of heterochromatin and its restriction of alternate fate genes

JS Becker, RL McCarthy, S Sidoli, G Donahue… - Molecular cell, 2017 - cell.com
Heterochromatin is integral to cell identity maintenance by impeding the activation of genes
for alternate cell fates. Heterochromatic regions are associated with histone 3 lysine 9 …