User profiles for Simone Sidoli
Simone SidoliAlbert Einstein College of Medicine Verified email at einsteinmed.edu Cited by 7424 |
An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease
Protein aggregation is the hallmark of neurodegeneration, but the molecular mechanisms
underlying late-onset Alzheimer’s disease (AD) are unclear. Here we integrated transcriptomic…
underlying late-onset Alzheimer’s disease (AD) are unclear. Here we integrated transcriptomic…
H1 histones control the epigenetic landscape by local chromatin compaction
H1 linker histones are the most abundant chromatin-binding proteins 1 . In vitro studies
indicate that their association with chromatin determines nucleosome spacing and enables …
indicate that their association with chromatin determines nucleosome spacing and enables …
Two distinct modes for propagation of histone PTMs across the cell cycle
…, TK Barth, N Reverón-Gómez, S Sidoli… - Genes & …, 2015 - genesdev.cshlp.org
Epigenetic states defined by chromatin can be maintained through mitotic cell division.
However, it remains unknown how histone-based information is transmitted. Here we combine …
However, it remains unknown how histone-based information is transmitted. Here we combine …
[PDF][PDF] High-resolution mapping of RNA-binding regions in the nuclear proteome of embryonic stem cells
C He, S Sidoli, R Warneford-Thomson, DC Tatomer… - Molecular cell, 2016 - cell.com
Interactions between noncoding RNAs and chromatin proteins play important roles in gene
regulation, but the molecular details of most of these interactions are unknown. Using protein-…
regulation, but the molecular details of most of these interactions are unknown. Using protein-…
[HTML][HTML] Transcription factor cooperativity in early adipogenic hotspots and super-enhancers
It is becoming increasingly clear that transcription factors operate in complex networks
through thousands of genomic binding sites, many of which bind several transcription factors. …
through thousands of genomic binding sites, many of which bind several transcription factors. …
Macrophages use apoptotic cell-derived methionine and DNMT3A during efferocytosis to promote tissue resolution
Efferocytosis, the clearance of apoptotic cells (ACs) by macrophages, is critical for tissue
resolution, with defects driving many diseases. Mechanisms of efferocytosis-mediated …
resolution, with defects driving many diseases. Mechanisms of efferocytosis-mediated …
Acetyl-CoA metabolism supports multistep pancreatic tumorigenesis
Pancreatic cancer is among the deadliest of human malignancies. We identify a key role for
the metabolic enzyme ACLY, which produces acetyl-CoA, in pancreatic carcinogenesis. The …
the metabolic enzyme ACLY, which produces acetyl-CoA, in pancreatic carcinogenesis. The …
Complete workflow for analysis of histone post-translational modifications using bottom-up mass spectrometry: from histone extraction to data analysis
S Sidoli, NV Bhanu, KR Karch, X Wang… - JoVE (Journal of …, 2016 - jove.com
Nucleosomes are the smallest structural unit of chromatin, composed of 147 base pairs of
DNA wrapped around an octamer of histone proteins. Histone function is mediated by …
DNA wrapped around an octamer of histone proteins. Histone function is mediated by …
[HTML][HTML] Characterization of histone acylations links chromatin modifications with metabolism
Over the last decade, numerous histone acyl post-translational modifications (acyl-PTMs)
have been discovered, of which the functional significance is still under intense study. Here, …
have been discovered, of which the functional significance is still under intense study. Here, …
[PDF][PDF] Genomic and proteomic resolution of heterochromatin and its restriction of alternate fate genes
Heterochromatin is integral to cell identity maintenance by impeding the activation of genes
for alternate cell fates. Heterochromatic regions are associated with histone 3 lysine 9 …
for alternate cell fates. Heterochromatic regions are associated with histone 3 lysine 9 …