Abstract
Autism spectrum disorders (ASD) are a group of neurodevelopmental disorders resulting from multiple factors. Diagnosis is based on behavioural and developmental signs detected before 3 years of age, and there is no reliable biological marker. The purpose of this study was to evaluate the value of gas chromatography combined with mass spectroscopy (GC-MS) associated with multivariate statistical modeling to capture the global biochemical signature of autistic individuals. GC-MS urinary metabolic profiles of 26 autistic and 24 healthy children were obtained by liq/liq extraction, and were or were not subjected to an oximation step, and then were subjected to a persilylation step. These metabolic profiles were then processed by multivariate analysis, in particular orthogonal partial least-squares discriminant analysis (OPLS-DA, R 2Y(cum) = 0.97, Q 2(cum) = 0.88). Discriminating metabolites were identified. The relative concentrations of the succinate and glycolate were higher for autistic than healthy children, whereas those of hippurate, 3-hydroxyphenylacetate, vanillylhydracrylate, 3-hydroxyhippurate, 4-hydroxyphenyl-2-hydroxyacetate, 1H-indole-3-acetate, phosphate, palmitate, stearate, and 3-methyladipate were lower. Eight other metabolites, which were not identified but characterized by a retention time plus a quantifier and its qualifier ion masses, were found to differ between the two groups. Comparison of statistical models leads to the conclusion that the combination of data obtained from both derivatization techniques leads to the model best discriminating between autistic and healthy groups of children.
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Abbreviations
- ASD:
-
Autism spectrum disorders
- BSTFA:
-
bis(trimethylsilyl)trifluoroacetamide
- GC-MS:
-
Gas chromatography combined with mass spectroscopy
- NMR:
-
Nuclear magnetic resonance
- OPLS-DA:
-
Orthogonal partial least-squares discriminant analysis
- Par:
-
Pareto
- PCA:
-
Principal component analysis
- PLS-DA:
-
Partial least-squares discriminant analysis
- TMS:
-
Trimethylsilylated derivative
- TMSO:
-
Trimethylsilylated and oximated derivative
- UV:
-
Unit variance
- VIP:
-
Variable importance on projection
References
Weintraub K (2011) The prevalence puzzle: autism counts. Nature 479(7371):22–24
Falck-Ytter T, von Hofsten C (2011) How special is social looking in ASD: a review. Prog Brain Res 189:209–222
Franke B, Faraone SV, Asherson P, Buitelaar J, Bau CH, Ramos-Quiroga JA, Mick E, Grevet EH, Johansson S, Haavik J, Lesch KP, Cormand B, Reif A (2011) The genetics of attention deficit/hyperactivity disorder in adults, a review. Mol Psychiatry 17:960–987
McPartland JC, Coffman M, Pelphrey KA (2011) Recent advances in understanding the neural bases of autism spectrum disorder. Curr Opin Pediatr 23(6):628–632
Schaefer GB, Lutz RE (2006) Diagnostic yield in the clinical genetic evaluation of autism spectrum disorders. Genet Med 8(9):549–556
Kolvin I (1971) Studies in the childhood psychoses. I. Diagnostic criteria and classification. Br J Psychiatry 118(545):381–384
Association AP (2000) Diagnostic and statistical manual of mental disorders, 4th edn. DSM-IV-TR®, Washington
Koek M, Jellema R, van der Greef J, Tas A, Hankemeier T (2011) Quantitative metabolomics based on gas chromatography mass spectrometry: status and perspectives. Metabolomics 7(3):307–328
Madsen R, Lundstedt T, Trygg J (2010) Chemometrics in metabolomics-A review in human disease diagnosis. Anal Chim Acta 659(1–2):23–33
Suhre K, Shin SY, Petersen AK, Mohney RP, Meredith D, Wagele B, Altmaier E, Deloukas P, Erdmann J, Grundberg E, Hammond CJ, de Angelis MH, Kastenmuller G, Kottgen A, Kronenberg F, Mangino M, Meisinger C, Meitinger T, Mewes HW, Milburn MV, Prehn C, Raffler J, Ried JS, Romisch-Margl W, Samani NJ, Small KS, Wichmann HE, Zhai G, Illig T, Spector TD, Adamski J, Soranzo N, Gieger C (2011) Human metabolic individuality in biomedical and pharmaceutical research. Nature 477(7362):54–60
Gebregiworgis T, Powers R (2012) Application of NMR metabolomics to search for human disease biomarkers. Comb Chem High Throughput Screen 15(8):595–610
Mercier P, Lewis MJ, Chang D, Baker D, Wishart DS (2011) Towards automatic metabolomic profiling of high-resolution one-dimensional proton NMR spectra. J Biomol NMR 49(3–4):307–323
Garcia A, Barbas C (2011) Gas chromatography-mass spectrometry (GC-MS)-based metabolomics. Methods Mol Biol 708:191–204
Yap IK, Angley M, Veselkov KA, Holmes E, Lindon JC, Nicholson JK (2010) Urinary metabolic phenotyping differentiates children with autism from their unaffected siblings and age-matched controls. J Proteome Res 9(6):2996–3004
Wang L, Angley MT, Gerber JP, Sorich MJ (2011) A review of candidate urinary biomarkers for autism spectrum disorder. Biomarkers 16(7):537–552
Organization WH (1991) International Classification of Diseases (ICD-10). World Health Organization, Geneva
Chan EC, Pasikanti KK, Nicholson JK (2011) Global urinary metabolic profiling procedures using gas chromatography-mass spectrometry. Nat Protoc 6(10):1483–1499
Xia J, Wishart DS (2011) Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst. Nat Protoc 6(6):743–760
Trygg J, Holmes E, Lundstedt T (2007) Chemometrics in metabonomics. J Proteome Res 6(2):469–479
van den Berg RA, Hoefsloot HC, Westerhuis JA, Smilde AK, van der Wer MJ (2006) Centering, scaling, and transformations: improving the biological information content of metabolomics data. BMC Genomics 7:142–157
Kemsley EK, Le Gall G, Dainty JR, Watson AD, Harvey LJ, Tapp HS, Colquhoun IJ (2007) Multivariate techniques and their application in nutrition: a metabolomics case study. Br J Nutr 98(1):1–14
Wold S, Sjöström M, Eriksson L (2001) PLS-regression: a basic tool of chemometrics. Chemometr Intell Lab 58(2):109–130
Trygg J (2002) O2-PLS for qualitative and quantitative analysis in multivariate calibration. J Chemom 16(6):283–293
Cloarec O, Dumas ME, Trygg J, Craig A, Barton RH, Lindon JC, Nicholson JK, Holmes E (2004) Evaluation of the orthogonal projection on latent structure model limitations caused by chemical shift variability and improved visualization of biomarker changes in 1H NMR spectroscopic metabonomic studies. Anal Chem 77(2):517–526
Westerhuis J, Hoefsloot H, Smit S, Vis D, Smilde A, van Velzen E, van Duijnhoven J, van Dorsten F (2008) Assessment of PLSDA cross validation. Metabolomics 4(1):81–89
Xia J, Bjorndahl TC, Tang P, Wishart DS (2008) MetaboMiner–semi-automated identification of metabolites from 2D NMR spectra of complex biofluids. BMC Bioinforma 9:507
Xia J, Psychogios N, Young N, Wishart DS (2009) MetaboAnalyst: a web server for metabolomic data analysis and interpretation. Nucleic Acids Res 37(Web Server issue):W652–W660
SIMCA-P + 12 User Guide http://wwwumetricscom/
Zuppi C, Messana I, Forni F, Rossi C, Pennacchietti L, Ferrari F, Giardina B (1997) 1H NMR spectra of normal urines: reference ranges of the major metabolites. Clin Chim Acta 265(1):85–97
Craig A, Cloarec O, Holmes E, Nicholson JK, Lindon JC (2006) Scaling and normalization effects in NMR spectroscopic metabonomic data sets. Anal Chem 78(7):2262–2267
Krug S, Kastenmüller G, Stückler F, Rist MJ, Skurk T, Sailer M, Raffler J, Römisch-Margl W, Adamski J, Prehn C, Frank T, Engel K-H, Hofmann T, Luy B, Zimmermann R, Moritz F, Schmitt-Kopplin P, Krumsiek J, Kremer W, Huber F, Oeh U, Theis FJ, Szymczak W, Hauner H, Suhre K, Daniel H (2012) The dynamic range of the human metabolome revealed by challenges. FASEB J 26(6):2607–2619
Rosenling T, Stoop MP, Attali A, Aken H, Suidgeest E, Christin C, Stingl C, Suits F, Horvatovich P, Hintzen RQ, Tuinstra T, Bischoff R, Luider TM (2012) Profiling and identification of cerebrospinal fluid proteins in a rat EAE model of multiple sclerosis. J Proteome Res 11(4):2048–2060
Ratajczak HV (2011) Theoretical aspects of autism: biomarkers-a review. J Immunotoxicol 8(1):80–94
Kaluzna-Czaplinska J (2011) Noninvasive urinary organic acids test to assess biochemical and nutritional individuality in autistic children. Clin Biochem 44(8–9):686–691
Lord RS, Burdette CK, Bralley JA (2005) Significance of urinary tartaric acid. Clin Chem 51(3):672–673
Shaw W, Kassen E, Chaves E (1995) Increased urinary excretion of analogs of Krebs cycle metabolites and arabinose in two brothers with autistic features. Clin Chem 41(8):1094–1104
Kaluzna-Czaplinska J, Michalska M, Rynkowski J (2011) Homocysteine level in urine of autistic and healthy children. Acta Biochim Pol 58(1):31–34
Adams JB, Audhya T, McDonough-Means S, Rubin RA, Quig D, Geis E, Gehn E, Loresto M, Mitchell J, Atwood S, Barnhouse S, Lee W (2011) Nutritional and metabolic status of children with autism vs. neurotypical children, and the association with autism severity. Nutr Metab 8(1):34
Evans C, Dunstan RH, Rothkirch T, Roberts TK, Reichelt KL, Cosford R, Deed G, Ellis LB, Sparkes DL (2008) Altered amino acid excretion in children with autism. Nutr Neurosci 11(1):9–17
Kaluzna-Czaplinska J, Socha E, Rynkowski J (2010) Determination of homovanillic acid and vanillylmandelic acid in urine of autistic children by gas chromatography/mass spectrometry. Med Sci Monit 16(9):CR445–CR450
Acknowledgments
This work was supported by the “Institut National de la Santé et de la Recherche” INSERM and the University François-Rabelais. We thank the center “Sésame Autisme Loiret” for participation in this study. We thank the “Département d’Analyses Chimiques et S.R.M. Biologique et Médicale” (PPF, Tours, France) for GC-MS analyses.
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Emond, P., Mavel, S., Aïdoud, N. et al. GC-MS-based urine metabolic profiling of autism spectrum disorders. Anal Bioanal Chem 405, 5291–5300 (2013). https://doi.org/10.1007/s00216-013-6934-x
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DOI: https://doi.org/10.1007/s00216-013-6934-x